2WTS Transferase date Sep 21, 2009
title Crystal Structure Of Sortase C-1 (Srtc-1) Mutant H131d From Pneumoniae
authors C.Manzano, T.Izore, V.Job, A.M.Diguilmi, A.Dessen
compound source
Molecule: Putative Sortase
Chain: A, B
Fragment: Residues 17-228
Synonym: Sortase C-1
Ec: 2.3.2.12
Engineered: Yes
Mutation: Yes
Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 170187
Strain: Tigr4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Ril
Expression_system_plasmid: Plim
symmetry Space Group: P 21 21 21
R_factor 0.158 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.348 70.523 87.278 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand ALA, GOL enzyme Transferase E.C.2.3.2.12 BRENDA
Primary referenceSortase activity is controlled by a flexible lid in the pilus biogenesis mechanism of gram-positive pathogens., Manzano C, Izore T, Job V, Di Guilmi AM, Dessen A, Biochemistry. 2009 Nov 10;48(44):10549-57. PMID:19810750
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]
  • Biological Unit Coordinates (2wts.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (2wts.pdb2.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 2WTS
  • CSU: Contacts of Structural Units for 2WTS
  • Structure Factors (1370 Kb)
  • Retrieve 2WTS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WTS from S2C, [Save to disk]
  • Re-refined 2wts structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WTS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WTS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WTS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wts_B] [2wts] [2wts_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2WTS
  • Community annotation for 2WTS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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