2WUH Receptor Peptide date Oct 05, 2009
title Crystal Structure Of The Ddr2 Discoidin Domain Bound To A Tr Helical Collagen Peptide
authors F.Carafoli, D.Bihan, S.Stathopoulos, A.D.Konitsiotis, M.Kvansaku R.W.Farndale, B.Leitinger, E.Hohenester
compound source
Molecule: Discoidin Domain Receptor 2
Chain: A
Fragment: Discoidin Domain, Residues 26-190
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: 293-Ebna
Expression_system_vector: Pcep-Pu

Molecule: Collagen Peptide
Chain: B, C, D
Engineered: Yes
Other_details: Acetylated N-Terminus

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor 0.202 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.397 40.863 48.917 66.19 88.90 76.92
method X-Ray Diffractionresolution 1.60 Å
ligand ACE, HYP, NLE enzyme
note 2WUH is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystallographic insight into collagen recognition by discoidin domain receptor 2., Carafoli F, Bihan D, Stathopoulos S, Konitsiotis AD, Kvansakul M, Farndale RW, Leitinger B, Hohenester E, Structure. 2009 Dec 9;17(12):1573-81. PMID:20004161
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (2wuh.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 2WUH
  • CSU: Contacts of Structural Units for 2WUH
  • Structure Factors (178 Kb)
  • Retrieve 2WUH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WUH from S2C, [Save to disk]
  • Re-refined 2wuh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WUH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WUH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WUH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wuh_A] [2wuh_B] [2wuh_C] [2wuh_D] [2wuh]
  • SWISS-PROT database: [Q16832]
  • Domain organization of [DDR2_HUMAN] by SWISSPFAM
  • Domain found in 2WUH: [FA58C ] by SMART
  • Other resources with information on 2WUH
  • Community annotation for 2WUH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science