2WVW Photosynthesis date Oct 20, 2009
title Cryo-Em Structure Of The Rbcl-Rbcx Complex
authors C.Liu, A.L.Young, A.Starling-Windhof, A.Bracher, S.Saschenbrecke B.V.Rao, K.V.Rao, O.Berninghausen, T.Mielke, F.U.Hartl, R.Beckma M.Hayer-Hartl
compound source
Molecule: Ribulose Bisphosphate Carboxylase Large Chain
Chain: A, B, C, D, E, F, G, H
Synonym: Rbcl, Rubisco Large Subunit
Ec: 4.1.1.39
Engineered: Yes
Organism_scientific: Synechococcus Elongatus
Organism_taxid: 269084
Strain: Pcc 6301
Atcc: 27144
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pet11a

Molecule: Rbcx Protein
Chain: I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X
Synonym: Rubisco Assembly Chaperone
Engineered: Yes

Organism_scientific: Anabaena Sp. Ca
Organism_taxid: 52271
Atcc: 33047
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pet28b
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 9.00 Å
ligand
enzyme Lyase E.C.4.1.1.39 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, E, C, A, B, H, D, G


S, T, N, K, V, Q, M, L, J, O, W, X, P, R, I, U


Primary referenceCoupled chaperone action in folding and assembly of hexadecameric Rubisco., Liu C, Young AL, Starling-Windhof A, Bracher A, Saschenbrecker S, Rao BV, Rao KV, Berninghausen O, Mielke T, Hartl FU, Beckmann R, Hayer-Hartl M, Nature. 2010 Jan 14;463(7278):197-202. PMID:20075914
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (739 Kb) [Save to disk]
  • Biological Unit Coordinates (2wvw.pdb1.gz) 729 Kb
  • CSU: Contacts of Structural Units for 2WVW
  • Retrieve 2WVW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WVW from S2C, [Save to disk]
  • View 2WVW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WVW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WVW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wvw_E] [2wvw_U] [2wvw_O] [2wvw_J] [2wvw_H] [2wvw_N] [2wvw_M] [2wvw_P] [2wvw_G] [2wvw_V] [2wvw] [2wvw_R] [2wvw_F] [2wvw_D] [2wvw_T] [2wvw_L] [2wvw_S] [2wvw_C] [2wvw_K] [2wvw_W] [2wvw_A] [2wvw_X] [2wvw_I] [2wvw_B] [2wvw_Q]
  • SWISS-PROT database: [Q44212] [P00880]
  • Domain organization of [Q44212_9NOST] [RBL_SYNP6] by SWISSPFAM
  • Other resources with information on 2WVW
  • Community annotation for 2WVW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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