2WXJ Transferase date Nov 09, 2009
title The Crystal Structure Of The Murine Class Ia Pi 3-Kinase P11 Complex With Ink654.
authors A.Berndt, S.Miller, O.Williams, D.D.Lee, B.T.Houseman, J.I.Pacold F.Gorrec, W.C.Hon, Y.Liu, C.Rommel, P.Gaillard, T.Ruckle, M.K.Sc K.M.Shokat, J.P.Shaw, R.L.Williams
compound source
Molecule: Phosphatidylinositol-4,5-Bisphosphate 3-Kinase Ca Subunit Delta Isoform;
Chain: A
Fragment: Residues 106-1044
Synonym: Pi3-Kinase P110 Subunit Delta, Ptdins-3-Kinase P11 P110delta, Pi3k;
Ec: 2.7.1.153
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac Hta
symmetry Space Group: C 1 2 1
R_factor 0.210 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
142.882 64.791 117.713 90.00 103.21 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand RW3 BindingDB enzyme Transferase E.C.2.7.1.153 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe p110 delta structure: mechanisms for selectivity and potency of new PI(3)K inhibitors., Berndt A, Miller S, Williams O, Le DD, Houseman BT, Pacold JI, Gorrec F, Hon WC, Liu Y, Rommel C, Gaillard P, Ruckle T, Schwarz MK, Shokat KM, Shaw JP, Williams RL, Nat Chem Biol. 2010 Feb;6(2):117-24. PMID:20081827
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (2wxj.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 2WXJ
  • CSU: Contacts of Structural Units for 2WXJ
  • Structure Factors (447 Kb)
  • Retrieve 2WXJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WXJ from S2C, [Save to disk]
  • Re-refined 2wxj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WXJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WXJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WXJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wxj] [2wxj_A]
  • SWISS-PROT database: [O35904]
  • Domain organization of [PK3CD_MOUSE] by SWISSPFAM
  • Domains found in 2WXJ: [PI3K_C2] [PI3K_rbd] [PI3Ka] [PI3Kc ] by SMART
  • Other resources with information on 2WXJ
  • Community annotation for 2WXJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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