2WYJ	Blood Clotting	date	Nov 16, 2009
title	Structure And Property Based Design Of Factor Xa Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
authors	S.Kleanthous, A.D.Borthwick, D.Brown, C.L.Burns-Kurtis, M.Campbe L.Chaudry, C.Chan, M.Clarte, M.A.Convery, J.D.Harling, E.Hortens W.R.Irving, S.Irvine, A.J.Pateman, A.Patikis, I.L.Pinto, D.R.Pol T.J.Roethka, S.Senger, G.P.Shah, G.J.Stelman, J.R.Toomey, N.S.Wa C.Whittaker, P.Zhou, R.J.Young
compound		source
Molecule: Activated Factor Xa Heavy Chain Chain: A Fragment: Activated Desgla, Residues 235-488 Ec: 3.4.21.6 Other_details: Disulphide Linked To Other Chain		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Blood Other_details: Purchased From Enzyme Research Labs, Isolate Human Blood;
Molecule: Factor X Light Chain Chain: B Fragment: Activated Desgla, Residues 46-179 Ec: 3.4.21.6 Other_details: Disulphide Linked To Other Chain		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Blood Other_details: Purchased From Enzyme Research Labs, Isolate Human Blood
symmetry	Space Group: P 21 21 21	R_factor 0.197 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.564 72.485 78.177 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.38 Å
ligand	898 BindingDB	enzyme	Hydrolase E.C.3.4.21.6 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Structure and property based design of factor Xa inhibitors: pyrrolidin-2-ones with monoaryl P4 motifs., Kleanthous S, Borthwick AD, Brown D, Burns-Kurtis CL, Campbell M, Chaudry L, Chan C, Clarte MO, Convery MA, Harling JD, Hortense E, Irving WR, Irvine S, Pateman AJ, Patikis AN, Pinto IL, Pollard DR, Roethka TJ, Senger S, Shah GP, Stelman GJ, Toomey JR, Watson NS, West RI, Whittaker C, Zhou P, Young RJ, Bioorg Med Chem Lett. 2010 Jan 15;20(2):618-22. Epub 2009 Nov 20. PMID:20006499

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (2wyj.pdb1.gz) 48 Kb LPC: Ligand-Protein Contacts for 2WYJ CSU: Contacts of Structural Units for 2WYJ Structure Factors (93 Kb) Retrieve 2WYJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2WYJ from S2C, [Save to disk] Re-refined 2wyj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 2WYJ

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2WYJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2wyj_A] [2wyj] [2wyj_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 2WYJ: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART

Other resources with information on 2WYJ

Community annotation for 2WYJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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