2WYU Oxidoreductase date Nov 20, 2009
title High Resolution Structure Of Thermus Thermophilus Enoyl-Acyl Protein Reductase Apo-Form
authors J.M.Otero, A.J.Noel, P.Guardado-Calvo, A.L.Llamas-Saiz, M.J.Van
compound source
Molecule: Enoyl-[Acyl Carrier Protein] Reductase
Chain: A, B, C, D
Ec: 1.3.1.10
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Atcc: 27634
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30a
Other_details: Thermus Thermophilus Dna Obtained From Prof. Liebl, Goettingen.
symmetry Space Group: P 1 21 1
R_factor 0.170 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.270 107.800 85.980 90.00 95.89 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand GOL, NA enzyme Oxidoreductase E.C.1.3.1.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceHigh-resolution structures of Thermus thermophilus enoyl-acyl carrier protein reductase in the apo form, in complex with NAD(+) and in complex with NAD(+) and triclosan., Otero JM, Noel AJ, Guardado-Calvo P, Llamas-Saiz AL, Wende W, Schierling B, Pingoud A, van Raaij MJ, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Oct 1;68(Pt 10):1139-48., doi: 10.1107/S1744309112033982. Epub 2012 Sep 22. PMID:23027736
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk]
  • Biological Unit Coordinates (2wyu.pdb1.gz) 173 Kb
  • LPC: Ligand-Protein Contacts for 2WYU
  • CSU: Contacts of Structural Units for 2WYU
  • Structure Factors (7890 Kb)
  • Retrieve 2WYU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WYU from S2C, [Save to disk]
  • Re-refined 2wyu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WYU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WYU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WYU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wyu_A] [2wyu] [2wyu_B] [2wyu_C] [2wyu_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2WYU
  • Community annotation for 2WYU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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