2WYW Oxidoreductase date Nov 20, 2009
title High Resolution Structure Of Thermus Thermophilus Enoyl-Acyl Protein Reductase Nad And Triclosan-Form
authors J.M.Otero, A.J.Noel, P.Guardado-Calvo, A.L.Llamas-Saiz, M.J.Van
compound source
Molecule: Enoyl-[Acyl Carrier Protein] Reductase
Chain: A, B, C, D
Ec: 1.3.1.10
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Atcc: 27634
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30a
Other_details: Thermus Thermophilus Dna Obtained From Prof. Liebl, Goettingen.
symmetry Space Group: P 1 21 1
R_factor 0.155 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.710 127.550 66.500 90.00 108.20 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand NAD, TCL enzyme Oxidoreductase E.C.1.3.1.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceHigh-resolution structures of Thermus thermophilus enoyl-acyl carrier protein reductase in the apo form, in complex with NAD(+) and in complex with NAD(+) and triclosan., Otero JM, Noel AJ, Guardado-Calvo P, Llamas-Saiz AL, Wende W, Schierling B, Pingoud A, van Raaij MJ, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Oct 1;68(Pt 10):1139-48., doi: 10.1107/S1744309112033982. Epub 2012 Sep 22. PMID:23027736
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (2wyw.pdb1.gz) 172 Kb
  • LPC: Ligand-Protein Contacts for 2WYW
  • CSU: Contacts of Structural Units for 2WYW
  • Structure Factors (3190 Kb)
  • Retrieve 2WYW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WYW from S2C, [Save to disk]
  • Re-refined 2wyw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WYW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WYW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WYW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wyw_A] [2wyw_B] [2wyw_D] [2wyw] [2wyw_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2WYW
  • Community annotation for 2WYW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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