2X0I Oxidoreductase date Dec 14, 2009
title 2.9 A Resolution Structure Of Malate Dehydrogenase From Arch Fulgidus In Complex With Nadh
authors A.Irimia, D.Madern, G.Zaccai, F.M.D.Vellieux, A.Karshikoff, G.Tib R.Ladenstein, T.Lien, N.K.Birkeland
compound source
Molecule: Malate Dehydrogenase
Chain: A
Ec: 1.1.1.37
Engineered: Yes
 Organism_scientific: Archaeoglobus Fulgidus Dsm 4304
Organism_taxid: 224325
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: One Shot
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psjs1240
symmetry Space Group: P 41 21 2
R_factor 0.152 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.964 112.964 71.294 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.91 Å
ligand NA, NAI, SO4 enzyme Oxidoreductase E.C.1.1.1.37 BRENDA
note 2X0I supersedes 1OJS
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe 2.9A resolution crystal structure of malate dehydrogenase from Archaeoglobus fulgidus: mechanisms of oligomerisation and thermal stabilisation., Irimia A, Vellieux FM, Madern D, Zaccai G, Karshikoff A, Tibbelin G, Ladenstein R, Lien T, Birkeland NK, J Mol Biol. 2004 Jan 2;335(1):343-56. PMID:14659762
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (2x0i.pdb1.gz) 188 Kb
  • LPC: Ligand-Protein Contacts for 2X0I
  • CSU: Contacts of Structural Units for 2X0I
  • Structure Factors (63 Kb)
  • Retrieve 2X0I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X0I from S2C, [Save to disk]
  • Re-refined 2x0i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2X0I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2X0I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X0I, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x0i_A] [2x0i]
  • SWISS-PROT database: [O08349]
  • Domain organization of [MDH_ARCFU] by SWISSPFAM
    • Other resources with information on 2X0I
  • Community annotation for 2X0I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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