2X0L	Transcription	date	Dec 15, 2009
title	Crystal Structure Of A Neuro-Specific Splicing Variant Of Hu Histone Lysine Demethylase Lsd1.
authors	C.Zibetti, A.Adamo, C.Binda, F.Forneris, C.Verpelli, E.Ginelli, A. C.Sala, E.Battaglioli
compound		source
Molecule: Lysine-Specific Histone Demethylase 1 Chain: A Synonym: Flavin-Containing Amine Oxidase Domain-Containing Braf35-Hdac Complex Protein Bhc110; Ec: 1.-.-.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rest Corepressor 1 Chain: B Synonym: Protein Corest, Corepressor Corest Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H3 Peptide Chain: C Fragment: Residues 2-17 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: I 2 2 2	R_factor 0.212 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 119.690 181.210 233.450 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	FAD	enzyme	Oxidoreductase E.C.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Alternative splicing of the histone demethylase LSD1/KDM1 contributes to the modulation of neurite morphogenesis in the mammalian nervous system., Zibetti C, Adamo A, Binda C, Forneris F, Toffolo E, Verpelli C, Ginelli E, Mattevi A, Sala C, Battaglioli E, J Neurosci. 2010 Feb 17;30(7):2521-32. PMID:20164337

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk] Biological Unit Coordinates (2x0l.pdb1.gz) 130 Kb LPC: Ligand-Protein Contacts for 2X0L CSU: Contacts of Structural Units for 2X0L Structure Factors (2683 Kb) Retrieve 2X0L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2X0L from S2C, [Save to disk] Re-refined 2x0l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2X0L in 3D

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Visual 3D analysis of 2X0L

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2X0L, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2x0l] [2x0l_C] [2x0l_B] [2x0l_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2X0L: [SANT ] by SMART

Other resources with information on 2X0L

Community annotation for 2X0L at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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