2X1B Transcription date Jan 06, 2010
title Structure Of Rna15 Rrm
authors C.Pancevac, D.C.Goldstone, A.Ramos, I.A.Taylor
compound source
Molecule: Mrna 3'-End-Processing Protein Rna15
Chain: A
Fragment: Rna Recognition Module, Residues 16-111
Synonym: Rna15 Rrm
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.18301 R_Free 0.22565
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.990 36.795 92.838 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the Rna15 RRM-RNA complex reveals the molecular basis of GU specificity in transcriptional 3'-end processing factors., Pancevac C, Goldstone DC, Ramos A, Taylor IA, Nucleic Acids Res. 2010 Jan 21. PMID:20097654
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (2x1b.pdb1.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 2X1B
  • CSU: Contacts of Structural Units for 2X1B
  • Structure Factors (115 Kb)
  • Retrieve 2X1B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X1B from S2C, [Save to disk]
  • Re-refined 2x1b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2X1B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2X1B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X1B, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x1b] [2x1b_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2X1B: [RRM ] by SMART
    • Other resources with information on 2X1B
  • Community annotation for 2X1B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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