2X2O Flavoprotein date Jan 15, 2010
title The Flavoprotein Nrdi From Bacillus Cereus With The Initiall Fmn Cofactor In An Intermediate Radiation Reduced State
authors A.K.Rohr, H.P.Hersleth, K.K.Andersson
compound source
Molecule: Nrdi Protein
Chain: A
Synonym: Nrdi
Engineered: Yes
 Organism_scientific: Bacillus Cereus
Organism_taxid: 226900
Atcc: 14579
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet22b
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.855 45.765 56.745 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.13 Å
ligand CAC, FMN, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTracking Flavin Conformations in Protein Crystal Structures with Raman Spectroscopy and QM/MM Calculations., Rohr AK, Hersleth HP, Andersson KK, Angew Chem Int Ed Engl. 2010 Feb 24. PMID:20187055
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2x2o.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 2X2O
  • CSU: Contacts of Structural Units for 2X2O
  • Structure Factors (429 Kb)
  • Retrieve 2X2O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X2O from S2C, [Save to disk]
  • Re-refined 2x2o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2X2O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2X2O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X2O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x2o] [2x2o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2X2O
  • Community annotation for 2X2O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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