2X47 Signaling Protein date Jan 28, 2010
title Crystal Structure Of Human Macrod1
authors M.Vollmar, C.Phillips, P.V.Mehrotra, I.Ahel, T.Krojer, W.Yue, E.Ug F.Von Delft, C.Bountra, C.H.Arrowsmith, J.Weigelt, A.Edwards, O.
compound source
Molecule: Macro Domain-Containing Protein 1
Chain: A
Fragment: Macro Domain, Residues 91-325
Synonym: Human Macro Domain 1, Lrp16
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_plasmid: Pnh-Trxt
symmetry Space Group: P 21 21 21
R_factor 0.165 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.920 63.410 75.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand SO4 enzyme
Primary referenceIdentification of macrodomain proteins as novel O-acetyl-ADP-ribose deacetylases., Chen D, Vollmar M, Rossi MN, Phillips C, Kraehenbuehl R, Slade D, Mehrotra PV, von Delft F, Crosthwaite SK, Gileadi O, Denu JM, Ahel I, J Biol Chem. 2011 Apr 15;286(15):13261-71. Epub 2011 Jan 21. PMID:21257746
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (2x47.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 2X47
  • CSU: Contacts of Structural Units for 2X47
  • Structure Factors (174 Kb)
  • Retrieve 2X47 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X47 from S2C, [Save to disk]
  • Re-refined 2x47 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X47 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X47
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X47, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x47] [2x47_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2X47: [A1pp ] by SMART
  • Other resources with information on 2X47
  • Community annotation for 2X47 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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