2X4W	Transcription	date	Feb 02, 2010
title	Molecular Basis Of Histone H3k36me3 Recognition By The Pwwp Brpf1.
authors	A.Vezzoli, N.Bonadies, M.D.Allen, S.M.V.Freund, C.M.Santiveri, B. B.J.P.Huntly, B.Gottgens, M.Bycroft
compound		source
Molecule: Peregrin Chain: A Fragment: Residues 1076-1205 Synonym: Brpf1 Pwwp Domain, Bromodomain And Phd Finger-Cont Protein 1, Protein Br140; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: C41 Expression_system_vector: Prseta
Molecule: Histone H3.2 Chain: B Fragment: Residues 23-43 Synonym: Human H3 Histone, H3m, H3o Engineered: Yes Other_details: Trimethylation At Position 36		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: I 2 2 2	R_factor 0.189 R_Free 0.216
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.261 71.053 113.982 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	FMT, M3L	enzyme
Primary reference	Molecular basis of histone H3K36me3 recognition by the PWWP domain of Brpf1., Vezzoli A, Bonadies N, Allen MD, Freund SM, Santiveri CM, Kvinlaug BT, Huntly BJ, Gottgens B, Bycroft M, Nat Struct Mol Biol. 2010 Apr 18. PMID:20400950

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk] Biological Unit Coordinates (2x4w.pdb1.gz) 28 Kb LPC: Ligand-Protein Contacts for 2X4W CSU: Contacts of Structural Units for 2X4W Structure Factors (210 Kb) Retrieve 2X4W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2X4W from S2C, [Save to disk] Re-refined 2x4w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2X4W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2X4W

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2X4W, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2x4w_A] [2x4w_B] [2x4w] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2X4W: [PWWP ] by SMART

Other resources with information on 2X4W

Community annotation for 2X4W at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---