2X5N	Nuclear Protein	date	Feb 10, 2010
title	Crystal Structure Of The Sprpn10 Vwa Domain
authors	C.Riedinger, J.Boehringer, J.F.Trempe, E.D.Lowe, N.R.Brown, K.Ge M.E.M.Noble, C.Gordon, J.A.Endicott
compound		source
Molecule: 26s Proteasome Regulatory Subunit Rpn10 Chain: A Fragment: Vwa Domain, Residues 2-193 Synonym: Sprpn10 Engineered: Yes		Organism_scientific: Schizosaccharomyces Pombe Organism_common: Fission Yeast Organism_taxid: 4896 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet21d
symmetry	Space Group: C 1 2 1	R_factor 0.1228 R_Free 0.1646
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.990 35.230 60.140 90.00 111.20 90.00
method	X-Ray Diffraction	resolution	1.30 Å
ligand	SO4	enzyme
note	2X5N is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	The structure of RPN10 and its interactions with polyubiquitin chains and the proteasome subunit RPN12., Riedinger C, Boehringer J, Trempe JF, Lowe ED, Brown NR, Gehring K, Noble ME, Gordon C, Endicott JA, J Biol Chem. 2010 Aug 24. PMID:20739285

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk] Biological Unit Coordinates (2x5n.pdb1.gz) 106 Kb LPC: Ligand-Protein Contacts for 2X5N CSU: Contacts of Structural Units for 2X5N Structure Factors (700 Kb) Retrieve 2X5N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2X5N from S2C, [Save to disk] Re-refined 2x5n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2X5N in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2X5N

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2X5N, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2x5n] [2x5n_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2X5N: [VWA ] by SMART

Other resources with information on 2X5N

Community annotation for 2X5N at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---