2X5O	Ligase	date	Feb 10, 2010
title	Discovery Of Novel 5-Benzylidenerhodanine- And 5-Benzylidene Thiazolidine-2,4-Dione Inhibitors Of Murd Ligase
authors	N.Zidar, T.Tomasic, R.Sink, V.Rupnik, A.Kovac, S.Turk, C.Contreras A.Dessen, D.Blanot, S.Gobec, A.Zega, L.Peterlin-Masic, D.Kikelja
compound		source
Molecule: Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase Chain: A Fragment: Residues 2-438 Synonym: Udp-N-Acetylmuramoyl-L-Alanyl-D-Glutamate Syntheta Glutamic Acid-Adding Enzymemurd Ligase; Ec: 6.3.2.9 Engineered: Yes		Organism_scientific: Escherichia Coli Dh5[Alpha] Organism_taxid: 668369 Strain: Dh5[Alpha] Expression_system: Escherichia Coli Dh5[Alpha] Expression_system_taxid: 668369 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pabd16murd
symmetry	Space Group: P 41	R_factor 0.185 R_Free 0.217
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.091 66.091 135.781 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.46 Å
ligand	AZI, CL, KCX, SO3, SO4, VSV	enzyme	Ligase E.C.6.3.2.9 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery of Novel 5-Benzylidenerhodanine and 5-Benzylidenethiazolidine-2,4-dione Inhibitors of MurD Ligase., Zidar N, Tomasic T, Sink R, Rupnik V, Kovac A, Turk S, Patin D, Blanot D, Contreras Martel C, Dessen A, Muller Premru M, Zega A, Gobec S, Peterlin Masic L, Kikelj D, J Med Chem. 2010 Aug 30. PMID:20804196

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk] Biological Unit Coordinates (2x5o.pdb1.gz) 147 Kb LPC: Ligand-Protein Contacts for 2X5O CSU: Contacts of Structural Units for 2X5O Structure Factors (663 Kb) Retrieve 2X5O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2X5O from S2C, [Save to disk] Re-refined 2x5o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2X5O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2X5O

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2X5O, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2x5o_A] [2x5o] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 2X5O

Community annotation for 2X5O at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---