2X6D Transferase date Feb 17, 2010
title Aurora-A Bound To An Inhibitor
authors M.Kosmopoulou, R.Bayliss
compound source
Molecule: Serinethreonine-Protein Kinase 6
Chain: A
Fragment: Catalytic Domain, Residues 122-403
Synonym: Aurora-A, Aurora Kinase A, Serinethreonine-Protei Aurora-A, Serinethreonine Kinase 15, Auroraipl1-Related K Aurora-Related Kinase 1, Ark-1, Hark-1, Breast Tumor-Amplif Kinase;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 61 2 2
R_factor 0.217 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.569 81.569 171.992 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand SO4, X6D BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceImidazo[4,5-b]pyridine Derivatives As Inhibitors of Aurora Kinases: Lead Optimization Studies toward the Identification of an Orally Bioavailable Preclinical Development Candidate., Bavetsias V, Large JM, Sun C, Bouloc N, Kosmopoulou M, Matteucci M, Wilsher NE, Martins V, Reynisson J, Atrash B, Faisal A, Urban F, Valenti M, de Haven Brandon A, Box G, Raynaud FI, Workman P, Eccles SA, Bayliss R, Blagg J, Linardopoulos S, McDonald E, J Med Chem. 2010 Jun 21. PMID:20565112
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (2x6d.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2X6D
  • CSU: Contacts of Structural Units for 2X6D
  • Structure Factors (119 Kb)
  • Retrieve 2X6D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X6D from S2C, [Save to disk]
  • Re-refined 2x6d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X6D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X6D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X6D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x6d_A] [2x6d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2X6D: [S_TKc ] by SMART
  • Other resources with information on 2X6D
  • Community annotation for 2X6D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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