2X7G Transferase date Feb 26, 2010
title Structure Of Human Serine-Arginine-Rich Protein-Specific Kin (Srpk2) Bound To Purvalanol B
authors A.C.W.Pike, P.Savitsky, O.Fedorov, T.Krojer, E.Ugochukwu, F.Von D O.Gileadi, A.Edwards, C.H.Arrowsmith, J.Weigelt, C.Bountra, S.Kn
compound source
Molecule: Uncharacterized Protein Srpk2
Chain: A
Fragment: Kinase Domain, Residues 62-267,519-699
Synonym: Serinethreonine-Protein Kinase Srpk
Ec: 2.7.11.1
Engineered: Yes
Other_details: Synthetic Construct Engineered To Remove Int Region.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 31 2 1
R_factor 0.183 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.310 110.310 90.590 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand ACT, EDO, PVB, SO4 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (2x7g.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 2X7G
  • CSU: Contacts of Structural Units for 2X7G
  • Structure Factors (842 Kb)
  • Retrieve 2X7G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X7G from S2C, [Save to disk]
  • Re-refined 2x7g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X7G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X7G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X7G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x7g_A] [2x7g]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2X7G: [STYKc ] by SMART
  • Other resources with information on 2X7G
  • Community annotation for 2X7G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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