2X7O Crystal structure of TGFbRI complexed with an indolinone inhibitor date
authors Roth, G.J., Heckel, A., Brandl, T., Grauert, M., Hoerer, S., Kley, J.T., Schnapp, G., Baum, P., Mennerich, D., Schnapp, A., Park, J.E.
compound source
symmetry
R_factor
R_Free 0.2732
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.70
ligand ZOP BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceDesign, Synthesis, and Evaluation of Indolinones as Inhibitors of the Transforming Growth Factor beta Receptor I (TGFbetaRI)., Roth GJ, Heckel A, Brandl T, Grauert M, Hoerer S, Kley JT, Schnapp G, Baum P, Mennerich D, Schnapp A, Park JE, J Med Chem. 2010 Oct 4. PMID:20919678
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (275 Kb) [Save to disk]
  • Biological Unit Coordinates (2x7o.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (2x7o.pdb2.gz) 56 Kb
  • Biological Unit Coordinates (2x7o.pdb3.gz) 57 Kb
  • Biological Unit Coordinates (2x7o.pdb4.gz) 57 Kb
  • Biological Unit Coordinates (2x7o.pdb5.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 2X7O
  • CSU: Contacts of Structural Units for 2X7O
  • Structure Factors (366 Kb)
  • Retrieve 2X7O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X7O from S2C, [Save to disk]
  • Re-refined 2x7o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2X7O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2X7O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X7O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x7o_D] [2x7o] [2x7o_E] [2x7o_C] [2x7o_B] [2x7o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2X7O: [GS] [STYKc ] by SMART
    • Other resources with information on 2X7O
  • Community annotation for 2X7O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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