2X82 Viral Protein date Mar 05, 2010
title Evolutionary Basis Of Hiv Restriction By The Antiretroviral
authors A.J.Price, L.C.James
compound source
Molecule: Capsid Protein P24
Chain: A, B, C, D
Fragment: N-Terminal Domain, Residues 136-280
Synonym: Ca
Engineered: Yes
 Organism_scientific: Human Immunodeficiency Virus Type 2 (I D194);
Organism_taxid: 11713
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.21547 R_Free 0.27982
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.470 116.770 129.360 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceConformational adaptation of Asian macaque TRIMCyp directs lineage specific antiviral activity., Ylinen LM, Price AJ, Rasaiyaah J, Hue S, Rose NJ, Marzetta F, James LC, Towers GJ, PLoS Pathog. 2010 Aug 19;6(8). pii: e1001062. PMID:20808866
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (2x82.pdb1.gz) 102 Kb
  • Biological Unit Coordinates (2x82.pdb2.gz) 104 Kb
  • CSU: Contacts of Structural Units for 2X82
  • Structure Factors (289 Kb)
  • Retrieve 2X82 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X82 from S2C, [Save to disk]
  • Re-refined 2x82 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2X82 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2X82
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X82, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x82_D] [2x82] [2x82_A] [2x82_C] [2x82_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2X82
  • Community annotation for 2X82 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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