2X86 Isomerase date Mar 06, 2010
title Agme Bound To Adp-B-Mannose
authors T.Kowatz, J.P.Morrison, M.E.Tanner, J.H.Naismith
compound source
Molecule: Adp-L-Glycero-D-Manno-Heptose-6-Epimerase
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Synonym: Agme, Adp-Hep 6-Epimerase, Adp-L-Glycero-Beta-D-Ma Heptose-6-Epimerase, Adp-Glyceromanno-Heptose 6-Epimerase;
Ec: 5.1.3.20
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.252 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
138.074 162.458 185.027 90.00 101.45 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand ADP, BMA, NAP enzyme Isomerase E.C.5.1.3.20 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G


Primary referenceThe crystal structure of the Y140F mutant of ADP-L-glycero-D-manno-heptose 6-epimerase bound to ADP-beta-D-mannose suggests a one base mechanism., Kowatz T, Morrison JP, Tanner ME, Naismith JH, Protein Sci. 2010 May 5. PMID:20506248
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1017 Kb) [Save to disk]
  • Biological Unit Coordinates (2x86.pdb1.gz) 257 Kb
  • Biological Unit Coordinates (2x86.pdb2.gz) 258 Kb
  • Biological Unit Coordinates (2x86.pdb3.gz) 257 Kb
  • Biological Unit Coordinates (2x86.pdb4.gz) 256 Kb
  • LPC: Ligand-Protein Contacts for 2X86
  • CSU: Contacts of Structural Units for 2X86
  • Structure Factors (1635 Kb)
  • Retrieve 2X86 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X86 from S2C, [Save to disk]
  • Re-refined 2x86 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X86 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X86
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X86, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x86_N] [2x86_R] [2x86_F] [2x86_L] [2x86_E] [2x86_K] [2x86_P] [2x86_D] [2x86_I] [2x86_J] [2x86_M] [2x86_B] [2x86] [2x86_H] [2x86_S] [2x86_C] [2x86_G] [2x86_A] [2x86_O] [2x86_T] [2x86_Q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2X86
  • Community annotation for 2X86 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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