2X8L Oxidoreductase date Mar 10, 2010
title Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
authors R.W.Birkinshaw, R.L.Brady
compound source
Molecule: L-Lactate Dehydrogenase
Chain: A
Synonym: Ldh-P
Ec: 1.1.1.27
Engineered: Yes
Organism_scientific: Plasmodium Falciparum
Organism_taxid: 5833
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk223
Other_details: Malaria Parasite
symmetry Space Group: I 2 2 2
R_factor 0.136 R_Free 0.167
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.120 85.410 91.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand GOL enzyme Oxidoreductase E.C.1.1.1.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (2x8l.pdb1.gz) 213 Kb
  • LPC: Ligand-Protein Contacts for 2X8L
  • CSU: Contacts of Structural Units for 2X8L
  • Structure Factors (576 Kb)
  • Retrieve 2X8L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X8L from S2C, [Save to disk]
  • Re-refined 2x8l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X8L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X8L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2X8L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x8l_A] [2x8l]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2X8L
  • Community annotation for 2X8L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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