2X9F	Transferase	date	Mar 17, 2010
title	Ephb4 Kinase Domain Inhibitor Complex
authors	J.Read, C.A.Brassington, I.Green, E.J.Mccall, A.L.Valentine, D.Ba
compound		source
Molecule: Ephrin Type-B Receptor 4 Chain: A Fragment: Kinase Domain, Residues 598-899 Synonym: Ephb4 Receptor Tyrosine Kinase, Tyrosine-Protein K Receptor Htk, Tyrosine-Protein Kinase Tyro11; Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf21 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
symmetry	Space Group: P 1 21 1	R_factor 0.157 R_Free 0.194
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.120 52.479 61.369 90.00 112.05 90.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	MG, X9F BindingDB	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Inhibitors of the tyrosine kinase EphB4. Part 3: Identification of non-benzodioxole-based kinase inhibitors., Bardelle C, Barlaam B, Brooks N, Coleman T, Cross D, Ducray R, Green I, Brempt CL, Olivier A, Read J, Bioorg Med Chem Lett. 2010 Sep 15. PMID:20850301

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (2x9f.pdb1.gz) 87 Kb LPC: Ligand-Protein Contacts for 2X9F CSU: Contacts of Structural Units for 2X9F Structure Factors (354 Kb) Retrieve 2X9F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2X9F from S2C, [Save to disk] Re-refined 2x9f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2X9F in 3D

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Visual 3D analysis of 2X9F

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2X9F, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2x9f_A] [2x9f] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2X9F: [TyrKc ] by SMART

Other resources with information on 2X9F

Community annotation for 2X9F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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