2XB5 Transcription date Apr 05, 2010
title Tet Repressor (Class D) In Complex With 7-Iodotetracycline
authors C.Kisker, W.Saenger, W.Hinrichs
compound source
Molecule: Tetracycline Repressor Protein Class D
Chain: A
Fragment: Residues 2-208
Synonym: Tet Repressor Class D
Engineered: Yes
Other_details: 7-Iodotetracycline, Mg-Complex
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
Expression_system_variant: Delta H1 Delta Trp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pwh904
symmetry Space Group: I 41 2 2
R_factor 0.162 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.860 68.860 180.940 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand CL, I7T, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the Tet repressor-tetracycline complex and regulation of antibiotic resistance., Hinrichs W, Kisker C, Duvel M, Muller A, Tovar K, Hillen W, Saenger W, Science. 1994 Apr 15;264(5157):418-20. PMID:8153629
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (2xb5.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 2XB5
  • CSU: Contacts of Structural Units for 2XB5
  • Structure Factors (110 Kb)
  • Retrieve 2XB5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XB5 from S2C, [Save to disk]
  • Re-refined 2xb5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XB5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XB5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XB5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xb5_A] [2xb5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XB5
  • Community annotation for 2XB5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science