2XCH Transferase date Apr 23, 2010
title Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazol Inhibitor
authors M.Angiolini, P.Banfi, E.Casale, F.Casuscelli, C.Fiorelli, M.B.Sac M.Silvagni, F.Zuccotto
compound source
Molecule: 3-Phosphoinositide Dependent Protein Kinase 1
Chain: A
Fragment: Kinase Catalytic Domain, Residues 1-309
Synonym: Hpdk1
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 32 2 1
R_factor 0.189 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.886 122.886 47.249 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand CKG, GOL, SEP, SO4 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-based optimization of potent PDK1 inhibitors., Angiolini M, Banfi P, Casale E, Casuscelli F, Fiorelli C, Saccardo MB, Silvagni M, Zuccotto F, Bioorg Med Chem Lett. 2010 Jul 15;20(14):4095-9. Epub 2010 Jun 8. PMID:20621725
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2xch.pdb1.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 2XCH
  • CSU: Contacts of Structural Units for 2XCH
  • Structure Factors (207 Kb)
  • Retrieve 2XCH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XCH from S2C, [Save to disk]
  • Re-refined 2xch structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XCH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XCH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XCH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xch_A] [2xch]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XCH: [S_TKc ] by SMART
  • Other resources with information on 2XCH
  • Community annotation for 2XCH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science