2XEF Hydrolase date May 14, 2010
title Human Glutamate Carboxypeptidase II In Complex With Antibody Recruiting Molecule Arm-P8
authors A.X.Zhang, R.P.Murelli, C.Barinka, J.Michel, A.Cocleaza, W.L.Jorg J.Lubkowski, D.A.Spiegel
compound source
Molecule: Glutamate Carboxypeptidase 2
Chain: A
Fragment: Ectodomain, Residues 44-750
Synonym: Glutamate Carboxypeptidase II, Membrane Glutamate Carboxypeptidase, Gcpii, N-Acetylated -Alpha-Linked Acidic Dipeptidase I, Naaladase I, Pteroylpoly-Gamma-Glutamate Carboxypeptidase, Folylpoly-Gamma-Glutamate Carboxypeptidas Fgcp, Folate Hydrolase 1, Prostate-Specific Membrane Antige Psm, Cell Growth-Inhibiting Gene 27 Protein;
Ec: 3.4.17.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_cell_line: S2
symmetry Space Group: I 2 2 2
R_factor 0.161 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.844 130.026 158.741 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.59 Å
ligand AR8, BMA, CA, CL, MAN, NAG, ZN enzyme Hydrolase E.C.3.4.17.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA remote arene-binding site on prostate specific membrane antigen revealed by antibody-recruiting small molecules., Zhang AX, Murelli RP, Barinka C, Michel J, Cocleaza A, Jorgensen WL, Lubkowski J, Spiegel DA, J Am Chem Soc. 2010 Sep 15;132(36):12711-6. PMID:20726553
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (259 Kb) [Save to disk]
  • Biological Unit Coordinates (2xef.pdb1.gz) 497 Kb
  • LPC: Ligand-Protein Contacts for 2XEF
  • CSU: Contacts of Structural Units for 2XEF
  • Structure Factors (1901 Kb)
  • Retrieve 2XEF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XEF from S2C, [Save to disk]
  • Re-refined 2xef structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XEF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XEF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XEF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xef_A] [2xef]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XEF
  • Community annotation for 2XEF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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