2XEJ Hydrolase date May 14, 2010
title Human Glutamate Carboxypeptidase II In Complex With Arm-M4, Based Inhibitor
authors A.X.Zhang, R.Murelli, C.Barinka, J.Michel, A.Cocleaza, W.L.Jorgen J.Lubkowski, D.A.Spiegel
compound source
Molecule: Glutamate Carboxypeptidase 2
Chain: A
Fragment: Ectodomain, Residues 44-750
Synonym: Glutamate Carboxypeptidase II, Gcpii, Membrane Glu Carboxypeptidase, N-Acetylated-Alpha-Linked Acidic Dipeptid Mgcp, Naaladase I, Pteroylpoly-Gamma- Glutamate Carboxypept Folylpoly-Gamma-Glutamate Carboxypeptidase, Fgcp, Folate Hy Prostate- Specific Membrane Antigen, Psma, Psm, Cell Growth Inhibiting Gene 27 Protein;
Ec: 3.4.17.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_cell_line: S2
symmetry Space Group: I 2 2 2
R_factor 0.157 R_Free 0.185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.508 129.958 159.246 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.78 Å
ligand BMA, CA, CL, MAN, NAG, OKD, ZN enzyme Hydrolase E.C.3.4.17.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA remote arene-binding site on prostate specific membrane antigen revealed by antibody-recruiting small molecules., Zhang AX, Murelli RP, Barinka C, Michel J, Cocleaza A, Jorgensen WL, Lubkowski J, Spiegel DA, J Am Chem Soc. 2010 Sep 15;132(36):12711-6. PMID:20726553
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk]
  • Biological Unit Coordinates (2xej.pdb1.gz) 491 Kb
  • LPC: Ligand-Protein Contacts for 2XEJ
  • CSU: Contacts of Structural Units for 2XEJ
  • Structure Factors (1403 Kb)
  • Retrieve 2XEJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XEJ from S2C, [Save to disk]
  • Re-refined 2xej structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XEJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XEJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XEJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xej] [2xej_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XEJ
  • Community annotation for 2XEJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science