2XFI Hydrolase date May 24, 2010
title Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(Cyclohex 1-Methyl-2-Oxoethyl)Amino)-2-Hydroxy-1-(Phenylmethyl)Propyl ((Methylsulfonyl)(Phenyl)Amino)Benzamide
authors B.Clarke, L.Cutler, E.Demont, C.Dingwall, R.Dunsdon, J.Hawkins, C. I.Hussain, G.Maile, R.Matico, J.Mosley, A.Naylor, A.O'Brien, S.Re P.Rowland, V.Soleil, K.J.Smith, S.Sweitzer, P.Theobald, D.Vesey, D.S.Walter, G.Wayne
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Residues 61-452
Synonym: Bace-1, Beta-Site Amyloid Precursor Protein Cleavi 1, Beta-Site App Cleaving Enzyme 1, Membrane-Associated Asp Protease 2, Memapsin-2, Aspartyl Protease 2, Asp2, Asp 2;
Ec: 3.4.23.46
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_tissue: Ovary
symmetry Space Group: P 21 21 21
R_factor 0.171 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.334 76.953 104.695 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.73 Å
ligand XFI BindingDB enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBACE-1 hydroxyethylamine inhibitors using novel edge-to-face interaction with Arg-296., Clarke B, Cutler L, Demont E, Dingwall C, Dunsdon R, Hawkins J, Howes C, Hussain I, Maile G, Matico R, Mosley J, Naylor A, O'Brien A, Redshaw S, Rowland P, Soleil V, Smith KJ, Sweitzer S, Theobald P, Vesey D, Walter DS, Wayne G, Bioorg Med Chem Lett. 2010 Jun 8. PMID:20579874
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (2xfi.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 2XFI
  • CSU: Contacts of Structural Units for 2XFI
  • Structure Factors (329 Kb)
  • Retrieve 2XFI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XFI from S2C, [Save to disk]
  • Re-refined 2xfi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XFI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XFI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XFI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xfi_A] [2xfi]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XFI
  • Community annotation for 2XFI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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