2XGC Transcription date Jun 03, 2010
title Crystal Structure Of A Designed Heterodimeric Variant T-A(I) Tetracycline Repressor
authors M.T.Stiebritz, S.Wengrzik, J.P.Richter, Y.A.Muller
compound source
Molecule: Tetracycline Repressor Protein Class B From Trans Tn10, Tetracycline Repressor Protein Class D;
Chain: A
Fragment: Residues 1-50,51-208
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tetracycline Repressor Protein Class B From Trans Tn10, Tetracycline Repressor Protein Class D;
Chain: B
Fragment: Residues 1-50,51-208
Engineered: Yes
Mutation: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 41 2 2
R_factor 0.217 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.152 69.152 183.372 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceComputational Design of a Chain-Specific Tetracycline Repressor Heterodimer., Stiebritz MT, Wengrzik S, Klein DL, Richter JP, Srebrzynski A, Weiler S, Muller YA, J Mol Biol. 2010 Sep 10. PMID:20816982
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (2xgc.pdb1.gz) 131 Kb
  • Biological Unit Coordinates (2xgc.pdb2.gz) 128 Kb
  • CSU: Contacts of Structural Units for 2XGC
  • Structure Factors (97 Kb)
  • Retrieve 2XGC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XGC from S2C, [Save to disk]
  • Re-refined 2xgc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XGC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XGC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XGC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xgc_A] [2xgc] [2xgc_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XGC
  • Community annotation for 2XGC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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