2XH2 Lyase date Jun 08, 2010
title Engineering The Enolase Active Site Pocket: Crystal Structur S39n D321a Mutant Of Yeast Enolase 1
authors B.Schreier, B.Hocker
compound source
Molecule: Enolase 1
Chain: A, B, C, D
Fragment: Residues 2-437
Synonym: 2-Phosphoglycerate Dehydratase 1,2-Phospho-D-Glyce Hydro-Lyase 1;
Ec: 4.2.1.11
Engineered: Yes
Mutation: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pet-21
symmetry Space Group: P 1
R_factor 0.166 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.720 82.540 95.610 89.41 71.31 84.80
method X-Ray Diffractionresolution 1.80 Å
ligand 2PG, MG enzyme Lyase E.C.4.2.1.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceEngineering the Enolase Magnesium II Binding Site: Implications for Its Evolution., Schreier B, Hocker B, Biochemistry. 2010 Aug 17. PMID:20690637
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (318 Kb) [Save to disk]
  • Biological Unit Coordinates (2xh2.pdb1.gz) 156 Kb
  • Biological Unit Coordinates (2xh2.pdb2.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 2XH2
  • CSU: Contacts of Structural Units for 2XH2
  • Structure Factors (1783 Kb)
  • Retrieve 2XH2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XH2 from S2C, [Save to disk]
  • Re-refined 2xh2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XH2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XH2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XH2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xh2_B] [2xh2] [2xh2_A] [2xh2_C] [2xh2_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2XH2: [Enolase_C] [Enolase_N ] by SMART
  • Other resources with information on 2XH2
  • Community annotation for 2XH2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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