2XH5 Transferase date Jun 09, 2010
title Structure Of 4-(4-Tert-Butylbenzyl)-1-(7h-Pyrrolo(2,3-D) Pyrimidin-4-Yl)Piperidin-4-Amine Bound To Pkb
authors T.G.Davies, T.Mchardy, J.J.Caldwell, K.M.Cheung, L.J.Hunter, K.Ta M.Rowlands, R.Ruddle, A.Henley, A.D.Brandon, M.Valenti, L.Fazal, L.Seavers, F.I.Raynaud, S.A.Eccles, G.W.Aherne, M.D.Garrett, I.C
compound source
Molecule: Rac-Beta Serinethreonine-Protein Kinase
Chain: A
Fragment: Kinase Catalytic Domain, Residues 146-467
Synonym: Rac-Pk-Beta, Protein Kinase Akt-2, Protein Kinase Pkb Beta;
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Other_details: Piftide Sequence (Eeqemfedfdyiadw) Replaces Pkb Sequence After Residue 464c;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Glycogen Synthase Kinase-3 Beta
Chain: C
Fragment: Residues 3-12
Synonym: Gsk-3 Beta, Gsk-3 Beta
Ec: 2.7.11.26
Other_details: Peptide Derived From The Kinase Gsk3-Beta

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.21133 R_Free 0.30537
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.948 61.233 135.671 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.72 Å
ligand TPO, X37 enzyme Transferase E.C.2.7.11.1 BRENDA
note 2XH5 supersedes 2X37
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of 4-Amino-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidine-4-carboxamides As Selective, Orally Active Inhibitors of Protein Kinase B (Akt)., McHardy T, Caldwell JJ, Cheung KM, Hunter LJ, Taylor K, Rowlands M, Ruddle R, Henley A, de Haven Brandon A, Valenti M, Davies TG, Fazal L, Seavers L, Raynaud FI, Eccles SA, Aherne GW, Garrett MD, Collins I, J Med Chem. 2010 Feb 12. PMID:20151677
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2xh5.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 2XH5
  • CSU: Contacts of Structural Units for 2XH5
  • Structure Factors (175 Kb)
  • Retrieve 2XH5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XH5 from S2C, [Save to disk]
  • Re-refined 2xh5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XH5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XH5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XH5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xh5_A] [2xh5_C] [2xh5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2XH5: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 2XH5
  • Community annotation for 2XH5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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