2XJW Hydrolase date Jul 06, 2010
title Lysozyme-Co Releasing Molecule Adduct
authors T.Santos-Silva, A.Mukhopadhyay, M.J.Romao
compound source
Molecule: Lysozyme C
Chain: A
Synonym: Hen Egg White Lysozyme, 1,4-Beta-N-Acetylmuramidas Allergen Gal D Iv, Allergen=Gal D 4;
Ec: 3.2.1.17
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 43 21 2
R_factor 0.169 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.400 78.400 36.970 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.67 Å
ligand CL, CMO, NA, RU enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCORM-3 Reactivity toward Proteins: The Crystal Structure of a Ru(II) Dicarbonyl-Lysozyme Complex., Santos-Silva T, Mukhopadhyay A, Seixas JD, Bernardes GJ, Romao CC, Romao MJ, J Am Chem Soc. 2011 Jan 4. PMID:21204537
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (2xjw.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 2XJW
  • CSU: Contacts of Structural Units for 2XJW
  • Structure Factors (188 Kb)
  • Retrieve 2XJW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XJW from S2C, [Save to disk]
  • Re-refined 2xjw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XJW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XJW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XJW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xjw] [2xjw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XJW: [LYZ1 ] by SMART
  • Other resources with information on 2XJW
  • Community annotation for 2XJW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science