2XLL Oxidoreductase date Jul 21, 2010
title The Crystal Structure Of Bilirubin Oxidase From Myrothecium
authors T.P.Mcnamara, E.D.Lowe, J.A.Cracknell, C.F.Blanford
compound source
Molecule: Bilirubin Oxidase
Chain: A, B, C, D
Ec: 1.3.3.5
Organism_scientific: Myrothecium Verrucaria
Organism_taxid: 5532
symmetry Space Group: P 1
R_factor 0.170 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.793 83.602 143.148 89.98 89.89 89.90
method X-Ray Diffractionresolution 2.31 Å
ligand CU, NAG enzyme Oxidoreductase E.C.1.3.3.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceBilirubin oxidase from Myrothecium verrucaria: X-ray determination of the complete crystal structure and a rational surface modification for enhanced electrocatalytic O(2) reduction., Cracknell JA, McNamara TP, Lowe ED, Blanford CF, Dalton Trans. 2011 May 5. PMID:21544308
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (690 Kb) [Save to disk]
  • Biological Unit Coordinates (2xll.pdb1.gz) 174 Kb
  • Biological Unit Coordinates (2xll.pdb2.gz) 175 Kb
  • Biological Unit Coordinates (2xll.pdb3.gz) 175 Kb
  • Biological Unit Coordinates (2xll.pdb4.gz) 175 Kb
  • LPC: Ligand-Protein Contacts for 2XLL
  • CSU: Contacts of Structural Units for 2XLL
  • Structure Factors (609 Kb)
  • Retrieve 2XLL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XLL from S2C, [Save to disk]
  • Re-refined 2xll structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XLL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XLL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XLL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xll] [2xll_A] [2xll_C] [2xll_D] [2xll_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XLL
  • Community annotation for 2XLL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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