2XOD Flavoprotein date Aug 14, 2010
title Crystal Structure Of Flavoprotein Nrdi From Bacillus Anthrac Oxidised Form
authors R.Johansson, J.Sprenger, E.Torrents, M.Sahlin, B.M.Sjoberg, D.T.L
compound source
Molecule: Nrdi Protein
Chain: A
Synonym: Nrdi
Engineered: Yes
Organism_scientific: Bacillus Anthracis
Organism_taxid: 1392
Strain: Sterne
Atcc: 7700
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pets153
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.540 45.550 56.130 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.96 Å
ligand CAC, FMN, ZN enzyme
note 2XOD is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHigh-resolution crystal structures of the flavoprotein NrdI in oxidized and reduced states--an unusual flavodoxin. Structural biology., Johansson R, Torrents E, Lundin D, Sprenger J, Sahlin M, Sjoberg BM, Logan DT, FEBS J. 2010 Oct;277(20):4265-77. doi: 10.1111/j.1742-4658.2010.07815.x., Epub 2010 Sep 10. PMID:20831589
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2xod.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 2XOD
  • CSU: Contacts of Structural Units for 2XOD
  • Structure Factors (592 Kb)
  • Retrieve 2XOD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XOD from S2C, [Save to disk]
  • Re-refined 2xod structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XOD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XOD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XOD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xod] [2xod_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XOD
  • Community annotation for 2XOD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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