2XOI Hydrolase date Aug 17, 2010
title Functional And Structural Analyses Of N-Acylsulfonamide-Link Dinucleoside Inhibitors Of Ribonuclease A
authors N.Thiyagarajan, B.D.Smith, R.T.Raines, K.R.Acharya
compound source
Molecule: Ribonuclease Pancreatic
Chain: A, B
Synonym: Rnase 1, Rnase A, Bovine Pancreatic Ribonuclease A
Ec: 3.1.27.5
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas
Other_details: Supplier Is Sigma
symmetry Space Group: C 1 2 1
R_factor 0.215 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.787 33.146 72.748 90.00 90.94 90.00
method X-Ray Diffractionresolution 1.72 Å
ligand SFB enzyme Hydrolase E.C.3.1.27.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • ribonuclease A activity


    • Primary referenceFunctional and structural analyses of N-acylsulfonamide-linked dinucleoside inhibitors of RNase A., Thiyagarajan N, Smith BD, Raines RT, Acharya KR, FEBS J. 2010 Dec 4. doi: 10.1111/j.1742-4658.2010.07976.x. PMID:21205197
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2xoi.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (2xoi.pdb2.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 2XOI
  • CSU: Contacts of Structural Units for 2XOI
  • Structure Factors (229 Kb)
  • Retrieve 2XOI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XOI from S2C, [Save to disk]
  • Re-refined 2xoi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2XOI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2XOI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XOI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xoi] [2xoi_B] [2xoi_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XOI: [RNAse_Pc ] by SMART
    • Other resources with information on 2XOI
  • Community annotation for 2XOI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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