2XOK Hydrolase date Aug 18, 2010
title Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resol
authors D.Stock, A.G.W Leslie, J.E.Walker
compound source
Molecule: Atp Synthase Subunit Alpha, Mitochondrial
Chain: A, B, C
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Organelle: Mitochondrion

Molecule: Atp Synthase Subunit Beta, Mitochondrial
Chain: D, E, F
Ec: 3.6.1.34
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Organelle: Mitochondrion

Molecule: Atp Synthase Subunit Gamma, Mitochondrial
Chain: G
Synonym: F-Atpase Gamma Subunit
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Organelle: Mitochondrion

Molecule: Atp Synthase
Chain: H
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Other_details: Mitochondrion

Molecule: Atp Synthase Catalytic Sector F1 Epsilon Subunit
Chain: I
Fragment: Residues 2-62
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Organelle: Mitochondrion

Molecule: Atp Synthase Subunit 9, Mitochondrial
Chain: K, L, M, N, O, P, Q, R, S, T
Synonym: Lipid-Binding Protein, Oligomycin Resistance Prote
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Organelle: Mitochondrion
symmetry Space Group: P 1 21 1
R_factor 0.210 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.352 173.711 137.889 90.00 91.77 90.00
method X-Ray Diffractionresolution 3.01 Å
ligand ANP, MG enzyme Hydrolase E.C.3.6.1.34 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
C, A, B


F, E, D


G


H


I


S, T, N, K, Q, M, L, O, P, R


Primary referenceMolecular architecture of the rotary motor in ATP synthase., Stock D, Leslie AG, Walker JE, Science. 1999 Nov 26;286(5445):1700-5. PMID:10576729
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1269 Kb) [Save to disk]
  • Biological Unit Coordinates (2xok.pdb1.gz) 1258 Kb
  • LPC: Ligand-Protein Contacts for 2XOK
  • CSU: Contacts of Structural Units for 2XOK
  • Structure Factors (1428 Kb)
  • Retrieve 2XOK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XOK from S2C, [Save to disk]
  • Re-refined 2xok structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2XOK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2XOK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XOK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xok_Q] [2xok_H] [2xok_P] [2xok_B] [2xok_S] [2xok_D] [2xok_O] [2xok_F] [2xok_M] [2xok_N] [2xok_L] [2xok_A] [2xok_E] [2xok] [2xok_G] [2xok_R] [2xok_K] [2xok_T] [2xok_I] [2xok_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XOK: [AAA ] by SMART
    • Other resources with information on 2XOK
  • Community annotation for 2XOK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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