2XPV Transcription date Aug 30, 2010
title Tetr(D) In Complex With Minocycline And Magnesium.
authors D.Dalm, J.Proft, G.J.Palm, W.Hinrichs
compound source
Molecule: Tetracycline Repressor Protein Class D
Chain: A
Fragment: Residues 2-208
Synonym: Tetracycline Repressor
Engineered: Yes
Other_details: C-Terminus Removed
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 83333
Expression_system_strain: K-12
Expression_system_variant: Delta H1 Delta Trp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pwh 610
symmetry Space Group: I 41 2 2
R_factor 0.185 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.686 68.686 178.673 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.49 Å
ligand CL, MG, MIY enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (2xpv.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 2XPV
  • CSU: Contacts of Structural Units for 2XPV
  • Structure Factors (247 Kb)
  • Retrieve 2XPV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XPV from S2C, [Save to disk]
  • Re-refined 2xpv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XPV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XPV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XPV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xpv] [2xpv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XPV
  • Community annotation for 2XPV at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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