2XQ1 Oxidoreductase date Aug 31, 2010
title Crystal Structure Of Peroxisomal Catalase From The Yeast Han Polymorpha
authors E.Penya-Soler, M.C.Vega, M.Wilmanns, C.P.Williams
compound source
Molecule: Peroxisomal Catalase
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Ec: 1.11.1.6
 Organism_scientific: Pichia Angusta
Organism_common: Hansenula Polymorpha
Organism_taxid: 4905
symmetry Space Group: P 1 21 1
R_factor 0.191 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.520 196.680 170.850 90.00 92.85 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand HEM enzyme Oxidoreductase E.C.1.11.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, N, K, E, M, C, L, A, J, O, P, B, H, D, I, G
  • catalase activity
  • peroxidase activity


    • Primary referenceStructural features of peroxisomal catalase from the yeast Hansenula polymorpha., Pena-Soler E, Vega MC, Wilmanns M, Williams C, Acta Crystallogr D Biol Crystallogr. 2011 Aug;67(Pt 8):690-8. Epub 2011 Jul 12. PMID:21795810
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1270 Kb) [Save to disk]
  • Biological Unit Coordinates (2xq1.pdb1.gz) 325 Kb
  • Biological Unit Coordinates (2xq1.pdb2.gz) 324 Kb
  • Biological Unit Coordinates (2xq1.pdb3.gz) 326 Kb
  • Biological Unit Coordinates (2xq1.pdb4.gz) 325 Kb
  • LPC: Ligand-Protein Contacts for 2XQ1
  • CSU: Contacts of Structural Units for 2XQ1
  • Structure Factors (2809 Kb)
  • Retrieve 2XQ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XQ1 from S2C, [Save to disk]
  • Re-refined 2xq1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2XQ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2XQ1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XQ1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xq1_F] [2xq1_I] [2xq1_L] [2xq1_N] [2xq1] [2xq1_J] [2xq1_E] [2xq1_P] [2xq1_D] [2xq1_C] [2xq1_G] [2xq1_K] [2xq1_O] [2xq1_B] [2xq1_M] [2xq1_H] [2xq1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XQ1: [Catalase ] by SMART
    • Other resources with information on 2XQ1
  • Community annotation for 2XQ1 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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