2XQL Nuclear Protein date Sep 02, 2010
title Fitting Of The H2a-H2b Histones In The Electron Microscopy M Complex Nucleoplasmin:H2a-H2b Histones (1:5).
authors I.Ramos, J.Martin-Benito, R.Finn, L.Bretana, K.Aloria, J.M.Arizme J.Ausio, A.Muga, J.M.Valpuesta, A.Prado
compound source
Molecule: Histone H2a-Iv
Chain: A, C, E, G, I
Fragment: Residues 16-106
Synonym: H2a Histone
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Cell: Erythrocyte

Molecule: Histone H2b 5
Chain: B, D, F, H, J
Fragment: Residues 37-126
Synonym: H2b Histone, H2b V

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Cell: Erythrocyte
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 19.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, I, G


F, J, B, H, D


Primary referenceNucleoplasmin binds histone H2A-H2B dimers through its distal face., Ramos I, Martin-Benito J, Finn R, Bretana L, Aloria K, Arizmendi JM, Ausio J, Muga A, Valpuesta JM, Prado A, J Biol Chem. 2010 Oct 29;285(44):33771-8. Epub 2010 Aug 9. PMID:20696766
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (2xql.pdb1.gz) 141 Kb
  • CSU: Contacts of Structural Units for 2XQL
  • Retrieve 2XQL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XQL from S2C, [Save to disk]
  • View 2XQL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XQL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XQL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xql_F] [2xql_H] [2xql_J] [2xql_G] [2xql_A] [2xql_E] [2xql_C] [2xql] [2xql_D] [2xql_B] [2xql_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2XQL: [H2A] [H2B ] by SMART
  • Other resources with information on 2XQL
  • Community annotation for 2XQL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science