2XSG Hydrolase date Sep 29, 2010
title Structure Of The Gh92 Family Glycosyl Hydrolase Ccman5
authors E.Baranova, P.Tiels, H.Remaut
compound source
Molecule: Ccman5
Chain: A, B
Fragment: Residues 1-774
Ec: 3.2.1.24
Engineered: Yes
Organism_scientific: Cellulosimicrobium Cellulans
Organism_taxid: 1710
Atcc: 27402
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plsahccman5domain
Other_details: Belgian Co-Ordinated Collections Of Micro-Or Strain Number Lmg 16121
symmetry Space Group: P 2 2 21
R_factor 0.19067 R_Free 0.23861
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.202 91.158 224.523 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand B3P, CA, GOL enzyme Hydrolase E.C.3.2.1.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA bacterial glycosidase enables mannose-6-phosphate modification and improved cellular uptake of yeast-produced recombinant human lysosomal enzymes., Tiels P, Baranova E, Piens K, De Visscher C, Pynaert G, Nerinckx W, Stout J, Fudalej F, Hulpiau P, Tannler S, Geysens S, Van Hecke A, Valevska A, Vervecken W, Remaut H, Callewaert N, Nat Biotechnol. 2012 Dec;30(12):1225-31. doi: 10.1038/nbt.2427. Epub 2012 Nov 18. PMID:23159880
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (252 Kb) [Save to disk]
  • Biological Unit Coordinates (2xsg.pdb1.gz) 126 Kb
  • Biological Unit Coordinates (2xsg.pdb2.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 2XSG
  • CSU: Contacts of Structural Units for 2XSG
  • Structure Factors (1595 Kb)
  • Retrieve 2XSG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XSG from S2C, [Save to disk]
  • Re-refined 2xsg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XSG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XSG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XSG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xsg] [2xsg_B] [2xsg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XSG
  • Community annotation for 2XSG at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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