2XV6 Viral Protein Immune System date Oct 22, 2010
title Crystal Structure Of The Hiv-1 Capsid Protein C-Terminal Dom 220) In Complex With A Camelid Vhh.
authors S.Igonet, M.C.Vaney, V.Bartonova, J.Helma, U.Rothbauer, H.Leonhar E.Stura, H.G.Krausslich, F.A.Rey
compound source
Molecule: Capsid Protein P24
Chain: A, C
Fragment: C-Terminal Domain, Residues 278-352
Synonym: Hiv-1 Capsid Protein
Engineered: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_common: Hiv-1
Organism_taxid: 11676
Strain: Nl4-3
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Codonplus-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11c

Molecule: Camelid Vhh 9
Chain: B, D
Engineered: Yes

Organism_scientific: Vicugna Pacos
Organism_common: Alpaca
Organism_taxid: 30538
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor 0.175 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.451 60.118 96.662 90.00 99.70 90.00
method X-Ray Diffractionresolution 1.89 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (2xv6.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (2xv6.pdb2.gz) 33 Kb
  • CSU: Contacts of Structural Units for 2XV6
  • Structure Factors (403 Kb)
  • Retrieve 2XV6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XV6 from S2C, [Save to disk]
  • Re-refined 2xv6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XV6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XV6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XV6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xv6_A] [2xv6] [2xv6_B] [2xv6_D] [2xv6_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XV6: [IGv ] by SMART
  • Other resources with information on 2XV6
  • Community annotation for 2XV6 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science