2XV7	Hormone	date	Oct 23, 2010
title	Crystal Structure Of Vascular Endothelial Growth Factor D
authors	V.M.Leppanen, M.Jeltsch, A.Anisimov, D.Tvorogov, K.Aho, N.Kalkki P.Toivanen, S.Yla-Herttuala, K.Ballmer-Hofer, K.Alitalo
compound		source
Molecule: Vascular Endothelial Growth Factor D Chain: A Fragment: Vegf Homology Domain, Residues 92-195 Synonym: C-Fos-Induced Growth Factor, Vegf-D, Figf Engineered: Yes Mutation: Yes Other_details: N-Glycosylation At Asn155 And Asn185.		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: Sf21 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
symmetry	Space Group: P 61 2 2	R_factor 0.255 R_Free 0.333
crystal cell	length a length b length c angle alpha angle beta angle gamma 95.720 95.720 70.940 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	BMA, MAN, NAG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural determinants of vascular endothelial growth factor-D - receptor binding and specificity., Leppanen VM, Jeltsch M, Anisimov A, Tvorogov D, Aho K, Kalkkinen N, Toivanen P, Yla-Herttuala S, Ballmer-Hofer K, Alitalo K, Blood. 2010 Dec 8. PMID:21148085

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk] Biological Unit Coordinates (2xv7.pdb1.gz) 75 Kb LPC: Ligand-Protein Contacts for 2XV7 CSU: Contacts of Structural Units for 2XV7 Structure Factors (35 Kb) Retrieve 2XV7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2XV7 from S2C, [Save to disk] Re-refined 2xv7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2XV7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2XV7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2XV7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2xv7] [2xv7_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 2XV7: [GHA] [PDGF ] by SMART

Other resources with information on 2XV7

Community annotation for 2XV7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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