2XVF Oxidoreductase date Oct 26, 2010
title Crystal Structure Of Bacterial Flavin-Containing Monooxygena
authors H.J.Cho, B.S.Kang
compound source
Molecule: Flavin-Containing Monooxygenase
Chain: A, B, C
Synonym: Nadph Oxidase, Indole Oxidase
Ec: 1.14.13.8
Engineered: Yes
Organism_scientific: Methylophaga Aminisulfidivorans
Organism_taxid: 230105
Strain: Sk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
Expression_system_vector: Pet30a
symmetry Space Group: C 1 2 1
R_factor 0.18364 R_Free 0.23570
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.620 70.085 140.960 90.00 90.71 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand FAD, GOL, MSE, NO3 enzyme Oxidoreductase E.C.1.14.13.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural and functional analysis of bacterial flavin-containing monooxygenase reveals its ping-pong-type reaction mechanism., Cho HJ, Cho HY, Kim KJ, Kim MH, Kim SW, Kang BS, J Struct Biol. 2011 Jul;175(1):39-48. Epub 2011 Apr 20. PMID:21527346
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (469 Kb) [Save to disk]
  • Biological Unit Coordinates (2xvf.pdb1.gz) 309 Kb
  • Biological Unit Coordinates (2xvf.pdb2.gz) 304 Kb
  • LPC: Ligand-Protein Contacts for 2XVF
  • CSU: Contacts of Structural Units for 2XVF
  • Structure Factors (679 Kb)
  • Retrieve 2XVF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XVF from S2C, [Save to disk]
  • Re-refined 2xvf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XVF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XVF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XVF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xvf_C] [2xvf_A] [2xvf_B] [2xvf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XVF
  • Community annotation for 2XVF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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