2XW9 Hydrolase date Nov 01, 2010
title Crystal Structure Of Complement Factor D Mutant S183a
authors F.Forneris, D.Ricklin, J.Wu, A.Tzekou, R.S.Wallace, J.D.Lambris, P
compound source
Molecule: Complement Factor D
Chain: A
Synonym: Adipsin, C3 Convertase Activator, Properdin Factor
Ec: 3.4.21.46
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293-E
Expression_system_plasmid: Pupe.05.05
symmetry Space Group: P 1 21 1
R_factor 0.144 R_Free 0.176
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.510 49.550 55.480 90.00 105.64 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand GOL enzyme Hydrolase E.C.3.4.21.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of C3b in complex with factors B and D give insight into complement convertase formation., Forneris F, Ricklin D, Wu J, Tzekou A, Wallace RS, Lambris JD, Gros P, Science. 2010 Dec 24;330(6012):1816-20. PMID:21205667
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (2xw9.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 2XW9
  • CSU: Contacts of Structural Units for 2XW9
  • Structure Factors (816 Kb)
  • Retrieve 2XW9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XW9 from S2C, [Save to disk]
  • Re-refined 2xw9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XW9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XW9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XW9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xw9_A] [2xw9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XW9: [Tryp_SPc ] by SMART
  • Other resources with information on 2XW9
  • Community annotation for 2XW9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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