2XYY Virus date Nov 19, 2010
title De Novo Model Of Bacteriophage P22 Procapsid Coat Protein
authors D.H.Chen, M.L.Baker, C.F.Hryc, F.Dimaio, J.Jakana, W.Wu, M.Doughe C.Haase-Pettingell, M.F.Schmid, W.Jiang, D.Baker, J.A.King, W.Ch
compound source
Molecule: Coat Protein
Chain: A, B, C, D, E, F, G
Synonym: P22
Engineered: Yes
Organism_scientific: Enterobacteria Phage P22
Organism_taxid: 10754
Atcc: 97540
Expression_system: Salmonella Enterica Subsp. Enterica Sero Typhimurium;
Expression_system_taxid: 90371
Expression_system_strain: Db7136
Expression_system_variant: 13amh101
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, G, E, B


Primary referenceStructural basis for scaffolding-mediated assembly and maturation of a dsDNA virus., Chen DH, Baker ML, Hryc CF, Dimaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W, Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1355-60. Epub 2011 Jan 10. PMID:21220301
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (2xyy.pdb1.gz) 3152 Kb
  • CSU: Contacts of Structural Units for 2XYY
  • Retrieve 2XYY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XYY from S2C, [Save to disk]
  • View 2XYY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XYY
  • VIPERdb: visual, structural and computational analysis of 2XYY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XYY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xyy_C] [2xyy_F] [2xyy_D] [2xyy_G] [2xyy_A] [2xyy] [2xyy_E] [2xyy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XYY
  • Community annotation for 2XYY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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