4V5Q The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome date
authors Schmeing, T.M., Voorhees, R.M., Ramakrishnan, V.
compound source
symmetry
R_factor
R_Free 0.2752
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
note 4V5Q supersedes 2Y0Y, 2Y0Z, 2Y12, 2Y13
Gene
Ontology
ChainFunctionProcessComponent
AB, CB


AC, CC


AH, CH


AI, CI


AL, CL


AM, CM


AN, CN


AO, CO


AS, CS


AT, CT


AU, CU


B0, D0


B1, D1


B3, D3


B4, D4


B6, D6


B7, D7


BC, DC


BE, DE


BF, DF


BN, DN


BO, DO


BQ, DQ


BS, DS


BT, DT


BW, DW


BX, DX


BY, DY


CD, AD


CE, AE


CF, AF


CG, AG


CJ, AJ


CK, AK


CP, AP


CQ, AQ


CR, AR


CZ, AZ


D2, B2


D5, B5


D8, B8


D9, B9


DD, BD


DG, BG


DH, BH


DP, BP


DR, BR


DU, BU


DV, BV


DZ, BZ


Primary referenceHow mutations in tRNA distant from the anticodon affect the fidelity of decoding., Schmeing TM, Voorhees RM, Kelley AC, Ramakrishnan V, Nat Struct Mol Biol. 2011 Apr;18(4):432-6. Epub 2011 Mar 6. PMID:21378964
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1276 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V5Q
  • Structure Factors (10998 Kb)
  • Retrieve 4V5Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V5Q from S2C, [Save to disk]
  • View 4V5Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V5Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v5q_CV] [4v5q_D8] [4v5q_BA] [4v5q_AK] [4v5q_DP] [4v5q_B0] [4v5q_BH] [4v5q_CE] [4v5q_AW] [4v5q_DN] [4v5q_CY] [4v5q_B3] [4v5q_D6] [4v5q_DS] [4v5q_BZ] [4v5q_D0] [4v5q_B5] [4v5q_DV] [4v5q_B4] [4v5q_AI] [4v5q_BT] [4v5q_DE] [4v5q_AQ] [4v5q_AX] [4v5q_CU] [4v5q_D7] [4v5q_AB] [4v5q_D9] [4v5q_AU] [4v5q_DR] [4v5q_CP] [4v5q_BD] [4v5q_CF] [4v5q_BP] [4v5q_CM] [4v5q_AH] [4v5q_DA] [4v5q_DY] [4v5q_DG] [4v5q_DF] [4v5q_BX] [4v5q_BF] [4v5q_CN] [4v5q_AP] [4v5q_D5] [4v5q_B7] [4v5q_CA] [4v5q_AL] [4v5q_D2] [4v5q_DO] [4v5q_AJ] [4v5q_BO] [4v5q_B1] [4v5q_BW] [4v5q_CR] [4v5q_DH] [4v5q_DT] [4v5q_DK] [4v5q_AY] [4v5q_CB] [4v5q_DZ] [4v5q_BR] [4v5q_DX] [4v5q_AS] [4v5q_B9] [4v5q_BS] [4v5q_DJ] [4v5q_BY] [4v5q_BC] [4v5q_B8] [4v5q_CK] [4v5q_CQ] [4v5q_CZ] [4v5q_AG] [4v5q_AN] [4v5q_BJ] [4v5q_DD] [4v5q_BU] [4v5q_CT] [4v5q_CL] [4v5q_AD] [4v5q_AE] [4v5q_BN] [4v5q_DC] [4v5q_DQ] [4v5q_CW] [4v5q_AM] [4v5q_AA] [4v5q_CH] [4v5q_CJ] [4v5q_B6] [4v5q_B2] [4v5q_AC] [4v5q_CX] [4v5q_CD] [4v5q_CI] [4v5q_BK] [4v5q_AO] [4v5q_DB] [4v5q_CO] [4v5q_BB] [4v5q_AF] [4v5q_AR] [4v5q_BQ] [4v5q_D3] [4v5q_DW] [4v5q_CS] [4v5q_BV] [4v5q_CC] [4v5q_AT] [4v5q_AV] [4v5q_DU] [4v5q] [4v5q_D4] [4v5q_D1] [4v5q_CG] [4v5q_BG] [4v5q_BE] [4v5q_AZ]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V5Q: [KH] [KOW] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V5Q
  • Community annotation for 4V5Q at PDBWiki (http://pdbwiki.org)

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