2Y78 Isomerase date Jan 28, 2011
title Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Bur Pseudomallei
authors I.H.Norville, K.O'Shea, M.Sarkar-Tyson, N.J.Harmer
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase
Chain: A
Synonym: Prolyl-Peptide Isomerase
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Burkholderia Pseudomallei
Organism_taxid: 272560
Strain: K96243
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet15b
symmetry Space Group: P 43 21 2
R_factor 0.109 R_Free 0.116
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.677 54.677 119.172 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.91 Å
ligand CL, GOL, SO4 enzyme Isomerase E.C.5.2.1.8 BRENDA
note 2Y78 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A
  • peptidyl-prolyl cis-trans is...


  • Primary referenceThe structure of a Burkholderia pseudomallei immunophilin-inhibitor complex reveals new approaches to antimicrobial development., Norville IH, O'Shea K, Sarkar-Tyson M, Zheng S, Titball RW, Varani G, Harmer NJ, Biochem J. 2011 May 16. PMID:21574961
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (2y78.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 2Y78
  • CSU: Contacts of Structural Units for 2Y78
  • Structure Factors (6919 Kb)
  • Retrieve 2Y78 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y78 from S2C, [Save to disk]
  • Re-refined 2y78 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y78 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y78
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Y78, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y78_A] [2y78]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2Y78
  • Community annotation for 2Y78 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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