2Y7C Transferase date Jan 31, 2011
title Atomic Model Of The Ocr-Bound Methylase Complex From The Typ Restriction-Modification Enzyme Ecoki (M2s1). Based On Fitt Em Map 1534.
authors C.K.Kennaway, A.Obarska-Kosinska, J.H.White, I.Tuszynska, L.P.Co J.M.Bujnicki, J.Trinick, D.T.F.Dryden
compound source
Molecule: Type-1 Restriction Enzyme Ecoki Specificity Prote
Chain: A
Synonym: Hsds Type I Dna Restriction Specificity Subunit, S Type I Restriction Enzyme Ecoki Specificity Protein, S Prot
Ec: 3.1.21.3
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: K

Molecule: Type I Restriction Enzyme Ecoki M Protein
Chain: B, C
Synonym: Hsdm Type I Dna Restriction Methyltransferase Subu M.Ecoki;
Ec: 3.1.21.3, 2.1.1.72

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: K

Molecule: Gene 0.3 Protein
Chain: D, E
Synonym: Ocr Antirestriction Protein, Dna Mimic
Engineered: Yes

Organism_scientific: Enterobacteria Phage T7
Organism_taxid: 10760
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 18.00 Å
ligand
enzyme Hydrolase E.C.3.1.21.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


C, B
  • site-specific DNA-methyltran...


  • D, E


    Primary referenceThe structure of M.EcoKI Type I DNA methyltransferase with a DNA mimic antirestriction protein., Kennaway CK, Obarska-Kosinska A, White JH, Tuszynska I, Cooper LP, Bujnicki JM, Trinick J, Dryden DT, Nucleic Acids Res. 2009 Feb;37(3):762-70. Epub 2008 Dec 11. PMID:19074193
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (244 Kb) [Save to disk]
  • Biological Unit Coordinates (2y7c.pdb1.gz) 240 Kb
  • CSU: Contacts of Structural Units for 2Y7C
  • Retrieve 2Y7C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y7C from S2C, [Save to disk]
  • View 2Y7C in 3D
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  • Visual 3D analysis of 2Y7C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Y7C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y7c_B] [2y7c_D] [2y7c_C] [2y7c] [2y7c_E] [2y7c_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2Y7C
  • Community annotation for 2Y7C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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