2Y7X Blood Clotting date Feb 02, 2011
title The Discovery Of Potent And Long-Acting Oral Factor Xa Inhib Tetrahydroisoquinoline And Benzazepine P4 Motifs
authors N.S.Watson, C.Adams, D.Belton, D.Brown, C.L.Burns-Kurtis, L.Chaud C.Chan, M.A.Convery, D.E.Davies, A.M.Exall, J.D.Harling, W.R.Irv S.Irvine, S.Kleanthous, I.M.Mclay, A.J.Pateman, A.N.Patikis, T.J S.Senger, G.J.Stelman, J.R.Toomey, R.I.West, C.Whittaker, P.Zhou R.J.Young
compound source
Molecule: Activated Factor Xa Heavy Chain
Chain: A
Synonym: Coagulation Factor X, Stuart Factor, Stuart-Prower
Ec: 3.4.21.6
Other_details: Disulphide Linked To Other Chain
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Purchased From Enzyme Research Labs. Isolate Human Blood;

Molecule: Factor X Light Chain
Chain: B
Fragment: Activated Desgla, Residues 46-179
Synonym: Coagulation Factor X, Stuart Factor, Stuart-Prower
Ec: 3.4.21.6
Other_details: Disulphide Linked To Other Chain

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Purchased From Enzyme Research Labs. Isolate Human Blood
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.859 71.599 78.279 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CA, MG, MZA BindingDB enzyme Hydrolase E.C.3.4.21.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceThe discovery of potent and long-acting oral factor Xa inhibitors with tetrahydroisoquinoline and benzazepine P4 motifs., Watson NS, Adams C, Belton D, Brown D, Burns-Kurtis CL, Chaudry L, Chan C, Convery MA, Davies DE, Exall AM, Harling JD, Irvine S, Irving WR, Kleanthous S, McLay IM, Pateman AJ, Patikis AN, Roethke TJ, Senger S, Stelman GJ, Toomey JR, West RI, Whittaker C, Zhou P, Young RJ, Bioorg Med Chem Lett. 2011 Mar 15;21(6):1588-92. Epub 2011 Feb 2. PMID:21349711
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (2y7x.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 2Y7X
  • CSU: Contacts of Structural Units for 2Y7X
  • Structure Factors (167 Kb)
  • Retrieve 2Y7X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y7X from S2C, [Save to disk]
  • Re-refined 2y7x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y7X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y7X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Y7X, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y7x_A] [2y7x] [2y7x_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2Y7X: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART
  • Other resources with information on 2Y7X
  • Community annotation for 2Y7X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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