2Y82	Blood Clotting	date	Feb 02, 2011
title	Structure And Property Based Design Of Factor Xa Inhibitors: Pyrrolidin-2-Ones With Aminoindane And Phenylpyrrolidine P4
authors	R.J.Young, C.Adams, M.Blows, D.Brown, C.L.Burns-Kurtis, L.Chaudry M.A.Convery, D.E.Davies, A.M.Exall, G.Foster, J.D.Harling, E.Hor W.R.Irving, S.Irvine, S.Jackson, S.Kleanthous, A.J.Pateman, A.N. T.J.Roethka, S.Senger, G.J.Stelman, J.R.Toomey, R.I.West, C.Whit P.Zhou, N.S.Watson
compound		source
Molecule: Activated Factor Xa Heavy Chain Chain: A Synonym: Coagulation Factor X, Stuart Factor, Stuart-Prower Ec: 3.4.21.6 Other_details: Disulphide Linked To Other Chain		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Purchased From Enzyme Research Labs. Isolate Human Blood;
Molecule: Factor X Light Chain Chain: B Fragment: Activated Desgla, Residues 46-179 Synonym: Coagulation Factor X, Stuart Factor, Stuart-Prower Ec: 3.4.21.6 Other_details: Disulphide Linked To Other Chain		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Purchased From Enzyme Research Labs. Isolate Human Blood
symmetry	Space Group: P 21 21 21	R_factor 0.178 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.693 72.212 78.759 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	930, CA, MG BindingDB	enzyme	Hydrolase E.C.3.4.21.6 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Structure and property based design of factor Xa inhibitors: Pyrrolidin-2-ones with aminoindane and phenylpyrrolidine P4 motifs., Young RJ, Adams C, Blows M, Brown D, Burns-Kurtis CL, Chan C, Chaudry L, Convery MA, Davies DE, Exall AM, Foster G, Harling JD, Hortense E, Irvine S, Irving WR, Jackson S, Kleanthous S, Pateman AJ, Patikis AN, Roethka TJ, Senger S, Stelman GJ, Toomey JR, West RI, Whittaker C, Zhou P, Watson NS, Bioorg Med Chem Lett. 2011 Mar 15;21(6):1582-7. Epub 2011 Feb 1. PMID:21349710

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (2y82.pdb1.gz) 51 Kb LPC: Ligand-Protein Contacts for 2Y82 CSU: Contacts of Structural Units for 2Y82 Structure Factors (127 Kb) Retrieve 2Y82 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Y82 from S2C, [Save to disk] Re-refined 2y82 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Y82, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2y82_A] [2y82_B] [2y82] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 2Y82: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART

Other resources with information on 2Y82

Community annotation for 2Y82 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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