2Y8G	Protein Transport	date	Feb 06, 2011
title	Structure Of The Ran-Binding Domain From Human Ranbp3 (E352a Double Mutant)
authors	K.Langer, C.Dian, V.Rybin, C.W.Muller, C.Petosa
compound		source
Molecule: Ran-Binding Protein 3 Chain: A, B Fragment: Ran Binding Domain, Residues 320-454 Synonym: Ranbp3-B Engineered: Yes Mutation: Yes Other_details: Isoform3		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Petm11
symmetry	Space Group: P 31 2 1	R_factor 0.1463 R_Free 0.1988
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.320 61.320 137.200 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.61 Å
ligand	SO4	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Insights into the Function of the CRM1 Cofactor RanBP3 from the Structure of Its Ran-Binding Domain., Langer K, Dian C, Rybin V, Muller CW, Petosa C, PLoS One. 2011 Feb 25;6(2):e17011. PMID:21364925

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (2y8g.pdb1.gz) 47 Kb Biological Unit Coordinates (2y8g.pdb2.gz) 45 Kb LPC: Ligand-Protein Contacts for 2Y8G CSU: Contacts of Structural Units for 2Y8G Structure Factors (210 Kb) Retrieve 2Y8G in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Y8G from S2C, [Save to disk] Re-refined 2y8g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Y8G in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2Y8G

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Y8G, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2y8g_A] [2y8g_B] [2y8g] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2Y8G: [RanBD ] by SMART

Other resources with information on 2Y8G

Community annotation for 2Y8G at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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